bkslab.orgAggregator Advisor Shoichet Laboratory @ UCSF

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Title:Aggregator Advisor Shoichet Laboratory @ UCSF

Description:Aggregator Advisor identifies molecules that are known-to aggregate or may aggregate in biochemical assays The approach is based on the chemical similarity to known aggregators and physical properties Please cite Irwin Duan Torosyan Doak Ziebart Sterling Tumanian and Shoichet JMedChem 2015 5817 7076-7087

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University of California, San Francisco About UCSF Search UCSF UCSF Medical Center Shoichet Laboratory Overview Projects People Publications TakeAways -- -- Applications -- -- DOCK -- DOCK Blaster -- ZINC -- SEA -- DUD -- DUD-E -- -- -- Applications Lab SOPs Contact Recent results from Shoichet Lab The genesis of computational chemistry & biology at UCSF -- -- -- D4 dopamine receptor high-resolution structures enable the discovery of selective agonists Wang, et al., Science , 2017 Discovery of new GPCR ligands to illuminate new biology BL Roth, JJ Irwin, BK Shoichet, Nature Chem. Biol. , 2017 In silico design of novel probes for the atypical opioid receptor MRGPRX2 K Lansu, J Karpiak, et al., Nature Chem. Biol. , 2017 -- -- -- Structure-based discovery of opioid analgesics with reduced side effects A Manglik, H Lin, D Aryal, et al., Nature , 2016 Testing inhomogeneous solvation theory in structure-based ligand discovery T Balius, M Fischer, R Stein, et al., PNAS , 2017 Reverse translation of adverse event reports paves the way for de-risking preclinical off-targets M Maciejewski et al., Elife , 2017 A new spin on antibody–drug conjugates: trastuzumab-fulvestrant colloidal drug aggregates target HER2-positive cells Ahil Ganesh et al., ACS Appl. Mat & Interfaces 2017 Crystal Structure of an LSD-Bound Human Serotonin Receptor D Wacker, et al., A Levit & BL Roth. Cell 2017 Identification of Novel Smoothened Ligands Using Structure-Based Docking C LeCroix, I Fish, et al., PLoS One 2016 Ligand Similarity Complements Sequence, Physical Interaction, and Co-Expression for Gene Function Prediction M O’Meara, et al., PLoS One , 2016 A Molecular Basis for Innovation in Drug Excipients J Irwin, J Pottel et al., Clin Pharmacol Ther. , 2016 Hydrogen Bonding of 1,2-Azaborines in the Binding Cavity of T4 Lysozyme Mutants: Structures and Thermodynamics H Lee, M Fischer, et al., JACS 2016 Internal Structure & Preferential Protein Binding of Colloidal Aggregates D Duan, H Torosyan et al., ACS Chem Biol. , 2017 Previous Next Shoichet Lab, Department of Pharmaceutical Chemistry, UCSF...

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